rs2746072 chr1:192808677 G>C
- Sequence
tgagggagcgccggcgcccccgcc[G/C]ggccgccgccaacttcggctccct
- ASB in cell types
- HepG2 (hepatoblastoma) neural cell epithelial cell of prostate GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SKI_HUMAN ZNF24_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.14 | 2.65 | 1.63 | 1.25 | Weak Concordant | |||
| SKI_HUMAN | n/a | 2.67 | 1.00 | n/a | n/a | |||
| ZNF24_HUMAN | -2.66 | 2.24 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | -0.33 | 1.33 | 1.96 | n/a | n/a |
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Motif analysis
