rs274671 chr5:6712420 T>G
- Sequence
ctttggacctcacaggatgtgtgg[T/G]tggcgctgtattccaaacagtgcc
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) neural cell HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.24 | 1.95 | 1.25 | n/a | No Hit | |||
| TYY1_HUMAN | -1.01 | 2.71 | 1.50 | n/a | No Hit | |||
| STAG1_HUMAN | -0.44 | 1.40 | 1.14 | n/a | n/a |
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