rs274754 chr1:36100016 G>A
- Sequence
gcaggggatttgggggctgggagc[G/A]atttgaggcactgtggggtgagga
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines) VCaP (prostate carcinoma)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN MGAP_HUMAN BRD9_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.90 | 0.54 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.89 | 1.01 | 1.31 | n/a | No Hit | |||
| MGAP_HUMAN | 2.11 | -1.78 | 1.00 | n/a | No Hit | |||
| BRD9_HUMAN | 2.62 | -2.34 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Muscle_Skeletal, Testis, Thyroid, Whole_Blood