rs2750013 chr17:782893 A>G

Sequence
ttgttgtttttgtttcaccatgtt[A/G]gccaggctgatctggaactcctga
ASB for transcription factors
FOXK2_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN n/a 2.67 1.005.6·10-3 1.00 n/a No Hit
ESR1_HUMAN 1.73 -0.60 0.041.00 2.00 2.50 Discordant
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Motif analysis

ESR1_HUMAN Discordant
ESR1_HUMAN pic

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Coronary,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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