rs27555 chr5:34929263 T>G
- Sequence
cacactgaccgccatctgtgcccc[T/G]cacaatgacaccagcgtggccctg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | 0.89 | 0.40 | 2.91 | |||
| GM12878 (female B-cells lymphoblastoid cell line) | 0.64 | 0.79 | 1.08 | |||
| 22RV1 (prostate carcinoma) | 1.84 | -0.76 | 1.67 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cortex, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis, Thyroid