rs2756369 chr6:88616498 C>T
- Sequence
gttccaatgtcacatccttaacac[C/T]tgttagtttttgttcctttttttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN IKZF1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 2.89 | -2.78 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.64 | -1.06 | 1.25 | n/a | n/a | |||
| TBX21_HUMAN | 1.35 | -2.37 | 1.50 | -2.94 | Concordant |
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Motif analysis
