rs2756370 chr6:88616525 A>T
- Sequence
ttagtttttgttcctttttttttt[A/T]aaaaaaattgacgcccattgttta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN STAG1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 3.27 | -3.61 | 1.00 | 1.61 | Weak Discordant | |||
| STAG1_HUMAN | 2.82 | n/a | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.73 | -1.31 | 1.25 | n/a | n/a |
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Motif analysis
