rs2760901 chr13:27426370 T>G

Sequence
gtagctcactgtgttcctgtttgc[T/G]tgttttgctcctagtactctcatg
ASB in cell types
MOLM-13(acute monocytic leukemia(AML), Homo sapiens) esophagus squamous epithelium
ASB for transcription factors
TEAD3_HUMAN KMT2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD3_HUMAN -2.45 2.39 1.000.03 1.00 n/a No Hit
KMT2A_HUMAN 0.19 2.62 0.690.03 1.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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