rs2761433 chr1:207744016 G>A
- Sequence
ttcttgtgctaagtcagttcctgg[G/A]tgagggccacaaagtcagataaga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIC_HUMAN TAL1_HUMAN HTF4_HUMAN MTG16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | n/a | 2.75 | 3.00 | 1.51 | Weak Concordant | |||
| TAL1_HUMAN | n/a | 3.17 | 3.00 | n/a | No Hit | |||
| HTF4_HUMAN | n/a | 3.14 | 3.00 | n/a | No Hit | |||
| MTG16_HUMAN | n/a | 1.34 | 3.00 | n/a | n/a | |||
| KDM1A_HUMAN | n/a | 2.29 | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis