rs2766557 chr6:35757655 C>A
- Sequence
aagcctggaagcaaatgcaccccc[C/A]agtggaaactgaagatgactgcaa
- ASB in cell types
- K562 (myelogenous leukemia) GM12890 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) WA09 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 0.48 | 1.54 | -0.24 | Weak Concordant | |||
| RAD21_HUMAN | 1.82 | 0.21 | 1.62 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
