rs2771338 chr14:20987000 G>T
- Sequence
agtcacaacacaagaaagctgact[G/T]caccagaaaaccctgtacaatccg
- ASB in cell types
- HKC8 (kidney proximal tubule cell line) TTC-1240 (Rhabdoid tumor of the kidney) HEK293 (embryonic kidney)
- ASB for transcription factors
- EPAS1_HUMAN SMRC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EPAS1_HUMAN | n/a | 2.92 | 1.00 | n/a | No Hit | |||
| SMRC1_HUMAN | -0.49 | 1.15 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood