rs2773320 chr6:5261448 A>G
- Sequence
atgcgacgtctgggtgtggaggtg[A/G]tgagctaggggttctgtggcactc
- ASB in cell types
- HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) iPS-derived chondrocytes
- ASB for transcription factors
- ZFX_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.33 | 1.80 | 1.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.24 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Thyroid, Whole_Blood