rs2776947 chr10:33381392 G>A
- Sequence
catctgaagcctcgatgttcagat[G/A]tgacatataatgaagcctcttctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | n/a | 3.63 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | n/a | 2.19 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -0.28 | 2.04 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, aortic valve calcium, asthma, height, salmonella-induced pyroptosis