rs2777321 chr9:121594597 T>C

Sequence
ccaagcagtcagtccagcaggtgg[T/C]ggggttgctttttccttttgacag
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.54 2.98 0.952.7·10-6 1.33 4.00 Concordant
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol change with statins,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Whole_Blood

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