rs2779165 chr19:4915435 G>C

Sequence
ttgatttataaaaacaggtatggc[G/C]gggcccagtggctcatgattgtaa
ASB in cell types
HEK293 (embryonic kidney) HCASMC (Human coronary artery smooth muscle cells) 22RV1 (prostate carcinoma)
ASB for transcription factors
TCF21_HUMAN HXB13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN n/a 2.27 1.001.4·10-6 2.00 n/a No Hit
HXB13_HUMAN n/a 2.49 1.000.01 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  hdl cholesterol,  homa-b,  infant head circumference,  total cholesterol,  triglycerides,  urinary albumin-to-creatinine ratio
GTEx eQTL Nerve_Tibial,  Testis

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