rs2785160 chr11:35030942 T>C

Sequence
ctaattataactcgtcctggcttc[T/C]cagataatgggtttgtctcaatag
ASB in cell types
K562 (myelogenous leukemia) monocytes from periferal blood MOLM14 (Adult acute myeloid leukemia)
ASB for transcription factors
REQU_HUMAN PKNX1_HUMAN MEIS2_HUMAN MTG16_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
REQU_HUMAN 2.34 -0.59 3.3·10-51.00 1.78 n/a n/a
PKNX1_HUMAN 1.90 n/a 3.3·10-41.00 2.00 n/a No Hit
MEIS2_HUMAN 1.13 n/a 8.0·10-31.00 2.00 n/a No Hit
MTG16_HUMAN 1.23 n/a 9.1·10-31.00 2.00 n/a n/a
ARI1B_HUMAN 0.76 n/a 0.021.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  comorbid depressive syndrome and alcohol dependence,  hypertension (early onset hypertension),  obesity with early age of onset (age >2),  systemic lupus erythematosus (sle),  triglycerides
GTEx eQTL Muscle_Skeletal,  Thyroid,  Whole_Blood

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