rs2785201 chr11:35067291 G>C
- Sequence
tcagtcacgggatctagcccatct[G/C]tagccacaagagtgggagtgagac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) GM12891 (male B- cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- STAG1_HUMAN IKZF2_HUMAN HTF4_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.89 | 0.17 | 1.03 | n/a | n/a | |||
| IKZF2_HUMAN | 1.62 | -0.49 | 1.00 | n/a | n/a | |||
| HTF4_HUMAN | 2.57 | -2.25 | 1.00 | -2.96 | Concordant | |||
| FLI1_HUMAN | 2.34 | -0.85 | 1.00 | n/a | No Hit | |||
| RAD51_HUMAN | 2.09 | -1.85 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid