rs2785981 chr1:219544432 A>C

Sequence
ttataaaagagaacaggaaagtac[A/C]cgaaaaaattagaactgacagtta
ASB in cell types
GM17942 (lymphoblastoid cell)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.98 0.48 5.4·10-31.00 1.63 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  fasting insulin,  hdl cholesterol,  height,  homa-b,  homa-ir,  infant head circumference,  triglycerides,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Kidney_Cortex,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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