rs2788016 chr1:246081320 T>A
- Sequence
aagcttcaaaaggagactctgtgc[T/A]tgtgtttacaaactgtgagactgc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN FOXA1_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 1.99 | -3.30 | 1.33 | 1.44 | Weak Discordant | |||
| FOXA1_HUMAN | 2.06 | n/a | 1.00 | -0.16 | Weak Concordant | |||
| FOXP1_HUMAN | 1.40 | -0.90 | 1.25 | n/a | No Hit |
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Motif analysis
