rs2788495 chr7:158803615 G>A

Sequence
aattaaagtcagcgcaaatggtca[G/A]aaagacttgcagaaagttaaaact
ASB for transcription factors
ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.22 2.32 0.790.01 2.75 -0.76 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

ESR1_HUMAN Weak Discordant
ESR1_HUMAN pic

Genetic associations

GRASP college completion,  total cholesterol,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

Download