rs2788506 chr1:99756748 T>A
- Sequence
aaaaaagaaggaaaacaatctttt[T/A]aaaccatgtcagatgattaagcta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) JB6 (Human anaplastic large cell lymphoma)
- ASB for transcription factors
- P53_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P53_HUMAN | -2.36 | 2.74 | 1.00 | n/a | No Hit | |||
| CEBPB_HUMAN | -0.27 | 1.47 | 1.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid, Whole_Blood