rs2789498 chr6:149454618 G>A
- Sequence
caagagggccctgtggacgtgccc[G/A]gggcaccagggcaggcgccctcgc
- ASB in cell types
- HKC8 (kidney proximal tubule cell line) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- ANDR_HUMAN EPAS1_HUMAN E2F8_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.04 | -0.40 | 1.67 | n/a | No Hit | |||
| EPAS1_HUMAN | 1.60 | 1.21 | 1.00 | n/a | No Hit | |||
| E2F8_HUMAN | -0.02 | 0.96 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.74 | -0.14 | 1.79 | 0.68 | Weak Discordant | |||
| EP300_HUMAN | 0.45 | 1.05 | 1.10 | n/a | n/a |
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Motif analysis
