rs2791682 chr13:100675091 G>T
- Sequence
cccggcgggagaggaggaagccgg[G/T]ttgtgggcgcggagctgaggcgga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells Kasumi-1 (acute myeloblastic leukemia)
- ASB for transcription factors
- MTG8_HUMAN ZNF24_HUMAN TBX21_HUMAN NFYC_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG8_HUMAN | 0.80 | 1.91 | 1.33 | n/a | n/a | |||
| ZNF24_HUMAN | n/a | 2.54 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | 0.76 | 2.58 | 1.00 | n/a | No Hit | |||
| NFYC_HUMAN | 1.70 | -1.48 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Vagina, Whole_Blood