rs2791683 chr13:100675198 C>T
- Sequence
aaaccgagtgagccctcgcttttc[C/T]tccggggtccgcgcgcgggaccct
- ASB in cell types
- SUM159PT (Triple negative breast cancer) Kasumi-1 (acute myeloblastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MTG8_HUMAN BRD2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG8_HUMAN | -0.32 | 1.40 | 1.33 | n/a | n/a | |||
| BRD2_HUMAN | -0.73 | 1.83 | 1.88 | n/a | n/a | |||
| ANDR_HUMAN | 2.00 | -0.36 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Vagina, Whole_Blood