rs2791700 chr1:207005198 T>G
- Sequence
cacctactggacgatgcacgttcc[T/G]agttaggaggagaggaagcctggg
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) HuCCT1 (intrahepatic cholangiocarcinoma) epidermal keratinocytes
- ASB for transcription factors
- CTCF_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.05 | 0.00 | 1.54 | n/a | No Hit | |||
| SMC1A_HUMAN | 1.85 | -0.81 | 2.00 | n/a | n/a |
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