rs2794352 chr1:3565405 G>C
- Sequence
tggtgcctgctctggcctctcaag[G/C]ccaccagggggtgccagcgcccca
- ASB in cell types
- foreskin keratinocyte transverse colon gastrocnemius medialis GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ARID2_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.29 | 0.31 | 1.46 | -2.85 | Concordant | |||
| STAG1_HUMAN | 0.51 | -0.44 | 1.39 | n/a | n/a | |||
| ARID2_HUMAN | 2.06 | -1.78 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.50 | -0.45 | 1.83 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
