rs2796136 chr1:234781921 C>A
- Sequence
aagaggcatcctggttgtgttgga[C/A]agaacatggtctttgcagccagac
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN SOX6_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.40 | 1.50 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | -1.66 | 2.76 | 2.00 | 2.03 | Concordant | |||
| SOX6_HUMAN | -2.66 | 2.57 | 1.00 | n/a | No Hit |
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Motif analysis
