rs2796372 chr1:203899490 A>C

Sequence
gactttactatttaccatctgtta[A/C]agcccaaatctgtgaagttaaatg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN GATA3_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.10 0.11 5.2·10-41.00 2.11 n/a No Hit
GATA3_HUMAN 1.68 0.00 8.7·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Whole_Blood

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