rs2798275 chr13:21584896 T>A
- Sequence
acagtaacagaagcataatttgta[T/A]atattagctactaaaacacatggt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.44 | 1.60 | 1.69 | 4.01 | Concordant |
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Motif analysis
Genetic associations
GRASP diastolic blood pressure (dbp), hdl cholesterol, microalbuminuria, systolic blood pressure (sbp)
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood