rs2798288 chr4:2934953 T>C
- Sequence
tcgccggtcctgcgggtcgctgct[T/C]ggctgtgggttagcagcaccctga
- ASB in cell types
- primary B-CLL cells CD14+ monocytes K562 (myelogenous leukemia) breast tumor
- ASB for transcription factors
- STAT1_HUMAN BRD4_HUMAN ESR1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.86 | 2.78 | 1.67 | n/a | No Hit | |||
| BRD4_HUMAN | 0.88 | 3.32 | 1.50 | n/a | n/a | |||
| ESR1_HUMAN | -0.61 | 2.34 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -2.02 | 2.46 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | -3.53 | 1.89 | 2.00 | -1.63 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood