rs2800138 chr10:90713271 A>T
- Sequence
ttaccatctcccagggcttagaca[A/T]acatcatggaataactttacaaag
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 (Invasive ductal breast carcinoma) LY-2 (invasive ductal carcinoma) breast tumor
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.94 | -0.08 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.98 | -2.26 | 1.75 | -4.17 | Concordant |
Items per page:
1 – 2 of 2
Motif analysis
