rs2800190 chr10:90652727 T>C
- Sequence
aagctcttaggcaccctctactgg[T/C]gtctgcagagatccagctaatgtt
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) GM19193 (female B-cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.76 | 0.90 | 1.24 | 0.59 | Weak Concordant | |||
| STAG1_HUMAN | 0.11 | 0.96 | 1.09 | n/a | n/a |
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Motif analysis
