rs2801195 chr1:208252572 C>G
- Sequence
tggtctctccaggacatcacccac[C/G]cctggtggaatgacagggaagttt
- ASB in cell types
- thoracic aorta upper lobe of left lung 2588 (Lymphoblastoid Cell Lines) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.98 | 1.03 | 2.01 | -2.49 | Concordant | |||
| STAG1_HUMAN | 2.65 | n/a | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.10 | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
