rs2801825 chr10:77859582 T>C
- Sequence
cgtagccagtacagtaccatgctg[T/C]acaggtttgcagctcaggagcaac
- ASB in cell types
- T47D (invasive ductal carcinoma) A1-2 (breast cancer cells)
- ASB for transcription factors
- PRGR_HUMAN ESR1_HUMAN GCR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | 2.40 | -0.12 | 1.53 | -2.60 | Concordant | |||
| ESR1_HUMAN | 1.99 | -0.41 | 1.75 | n/a | No Hit | |||
| GCR_HUMAN | 2.23 | -4.15 | 1.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.97 | 1.21 | 1.90 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood