rs2802930 chr1:234960865 C>T
- Sequence
aactttccatacaatgccggaccc[C/T]gagttcacttcctggtttcactgt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) MCF7 WS8 cells MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN ELF1_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.04 | 1.41 | 1.86 | n/a | No Hit | |||
| ESR1_HUMAN | -0.05 | 1.46 | 1.84 | n/a | No Hit | |||
| ELF1_HUMAN | -0.30 | 1.48 | 1.75 | n/a | No Hit | |||
| GATA3_HUMAN | -0.35 | 1.54 | 1.94 | n/a | No Hit | |||
| PKNX1_HUMAN | -2.53 | 1.66 | 1.50 | n/a | No Hit |
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