rs2805807 chr9:97572585 A>G
- Sequence
ctgtgcctccccttcaggtgcccc[A/G]gccccaggctggggggaggcaggg
- ASB in cell types
- MDA-MB-231ERb(triple negative breast cancer)
- ASB for transcription factors
- ESR2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR2_HUMAN | 2.11 | n/a | 2.00 | -0.76 | Weak Concordant | |||
| ESR1_HUMAN | 0.99 | -0.19 | 1.60 | 0.23 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid