rs2807591 chr9:124133910 A>G
- Sequence
tgtcaggatccctagggggcatgc[A/G]ttgtccattgtggagcagccacag
- ASB in cell types
- GM18951 (B-cells Lymphoblastoid Cell Lines) GM12873 (female B-cells) T47D (invasive ductal carcinoma) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN FOXP1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.04 | 1.88 | 1.57 | 0.67 | Weak Concordant | |||
| STAG1_HUMAN | 0.13 | 2.50 | 2.14 | n/a | n/a | |||
| FOXP1_HUMAN | -2.39 | 2.73 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | -0.17 | 1.03 | 1.10 | n/a | n/a |
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Motif analysis
