rs2807606 chr9:124123038 C>T
- Sequence
agtggcagccagcagagggagact[C/T]gaagctttcctgtgttgttcagag
- ASB in cell types
- GM18951 (B-cells Lymphoblastoid Cell Lines) GM12890 (Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line) liver
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.58 | 0.16 | 1.39 | 0.47 | Weak Discordant | |||
| STAG1_HUMAN | 1.86 | -2.05 | 1.45 | n/a | n/a | |||
| RAD21_HUMAN | 2.39 | 0.48 | 1.44 | n/a | n/a |
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Motif analysis
