rs281439 chr19:10289434 G>C
- Sequence
cgtcccgccccctccgtcgcgtgc[G/C]ggagctgacccggaggggtgctta
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- ZFHX2_HUMAN ZXDB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFHX2_HUMAN | n/a | 1.89 | 2.00 | n/a | n/a | |||
| ZXDB_HUMAN | n/a | 3.18 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP breast cancer, breast cancer (with organ metastases), breast cancer (years since diagnosis), college completion, infant head circumference, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood