rs2815573 chr10:27699962 G>T

Sequence
cagctgtgtttacttagacttaac[G/T]tgacaaagtctgcctctgattata
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) MCF7 WS8 cells breast tumor
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.28 1.50 1.003.3·10-8 1.60 n/a No Hit
ESR1_HUMAN -0.15 1.99 1.003.4·10-4 1.80 n/a No Hit
ANDR_HUMAN 0.20 1.48 1.009.2·10-4 1.35 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  homa-b,  triglycerides

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