rs2816057 chr1:18575763 G>C
- Sequence
ttcgcccaggccttgactctgctg[G/C]cccccagtggccatctgtgttgtt
- ASB in cell types
- Peyer's patch adrenal gland upper lobe of left lung foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN PRDM9_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.61 | 3.06 | 1.73 | 4.41 | Concordant | |||
| STAG1_HUMAN | 0.26 | 2.34 | 3.90 | n/a | n/a | |||
| PRDM9_HUMAN | -1.98 | 2.78 | 2.00 | n/a | No Hit |
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Motif analysis
