rs2817245 chr6:24547378 G>A
- Sequence
gcacagaagcatctgaggaggaac[G/A]ccgtgattcacttccagctgtcag
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) GM19193 (female B-cells Lymphoblastoid Cell Lines) HEK293 (embryonic kidney) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN PBX1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.76 | 0.72 | 1.40 | n/a | No Hit | |||
| STAG1_HUMAN | 2.43 | -0.20 | 1.60 | n/a | n/a | |||
| PBX1_HUMAN | -3.44 | 2.18 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | n/a | 2.99 | 3.00 | 5.91 | Concordant |
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Motif analysis
