rs2820 chr2:20349673 C>G

Sequence
tattaaaattgttttcttgacata[C/G]agtacctttacaggtattacattt
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
TBP_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBP_HUMAN 0.31 1.85 1.006.0·10-3 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  hdl cholesterol,  ldl cholesterol,  ldl cholesterol change with statins,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Adrenal_Gland,  Cells_Cultured_fibroblasts,  Stomach

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