rs2824397 chr21:17607950 C>A
- Sequence
tttaagctgtaaatgtaccttata[C/A]agcagagtacaaaagacagctcca
- ASB in cell types
- VCaP (prostate carcinoma) sigmoid colon
- ASB for transcription factors
- FOXA1_HUMAN EP300_HUMAN HXB13_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.56 | 1.43 | 1.53 | n/a | No Hit | |||
| EP300_HUMAN | -0.73 | 2.01 | 1.00 | n/a | n/a | |||
| HXB13_HUMAN | -1.20 | 1.65 | 1.88 | 4.96 | Concordant |
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Motif analysis
