rs283208 chr6:101281470 A>C

Sequence
agtatagaaatagaaagctgcata[A/C]cctgttttccagcctccctccagg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma)
ASB for transcription factors
GRHL2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GRHL2_HUMAN 2.80 -1.98 6.7·10-51.00 1.50 -5.18 Concordant
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Motif analysis

GRHL2_HUMAN Concordant
GRHL2_HUMAN pic

Genetic associations

GRASP birth weight,  hdl cholesterol change with statins,  obesity with early age of onset (age >2),  panic disorder,  waist hip ratio
GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Pancreas,  Thyroid

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