rs283718 chr8:127294837 C>T
- Sequence
ctacatctcacagagctattaggt[C/T]tgtatacttccttgtgctctgctc
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma) pancreatic ductal adenocarcinoma BIN-67 (Ovarian small cell carcinoma, hypercalcemic type)
- ASB for transcription factors
- FOXA2_HUMAN FOXA1_HUMAN REQU_HUMAN ELF3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | n/a | 2.87 | 2.80 | n/a | No Hit | |||
| FOXA1_HUMAN | -1.15 | 3.18 | 2.00 | 1.34 | Weak Concordant | |||
| REQU_HUMAN | -4.62 | 2.79 | 1.50 | n/a | n/a | |||
| ELF3_HUMAN | -0.82 | 1.87 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP alzheimers disease, college completion, late onset alzheimers disease, obesity with early age of onset (age >2)