rs2842879 chr1:156193904 G>T
- Sequence
cacgcaggcgccttaacgctgagg[G/T]cataacgaaggtaaagaaggcgtg
- ASB in cell types
- BEAS-2B (bronchial epithelium) lymphoblastoid cells K562 (myelogenous leukemia) adult erythroblasts
- ASB for transcription factors
- TYY1_HUMAN GCR_HUMAN NRF1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.03 | -1.14 | 1.17 | n/a | No Hit | |||
| GCR_HUMAN | -0.15 | 1.47 | 1.17 | n/a | No Hit | |||
| NRF1_HUMAN | 1.43 | 0.71 | 2.67 | n/a | No Hit | |||
| GABPA_HUMAN | 1.64 | -0.38 | 1.83 | n/a | No Hit | |||
| SP1_HUMAN | 1.58 | -0.52 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid