rs2853734 chr1:28511063 T>C
- Sequence
aacttcagcttgcaataccccttt[T/C]ttagactttccaaacaggcacttc
- ASB in cell types
- HEK293 (embryonic kidney) primary human neonatal keratinocytes
- ASB for transcription factors
- ANM1_HUMAN CDK8_HUMAN AGO2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANM1_HUMAN | 2.52 | -5.29 | 2.00 | n/a | n/a | |||
| CDK8_HUMAN | -0.49 | 1.90 | 1.00 | n/a | n/a | |||
| AGO2_HUMAN | -0.82 | 1.45 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood