rs28550594 chr1:16089094 G>A

Sequence
agcatgggacttgaggcccctctc[G/A]gggcctcagttcccctcagcgact
ASB for transcription factors
EMSY_HUMAN RING2_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EMSY_HUMAN -1.55 1.82 1.008.7·10-3 1.00 n/a n/a
RING2_HUMAN 2.53 -2.23 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Thyroid,  Whole_Blood

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