rs285614 chr6:90350907 A>G

Sequence
tcctctgccaccagatgacgacat[A/G]cttgcttcctcttcacccttctgc
ASB in cell types
K562 (myelogenous leukemia) monocytes from periferal blood
ASB for transcription factors
ATF2_HUMAN ATF4_HUMAN ATF3_HUMAN CEBPG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN 1.85 n/a 6.8·10-121.00 2.00 0.99 Weak Discordant
ATF4_HUMAN 2.80 n/a 1.2·10-61.00 2.00 -0.50 Weak Concordant
ATF3_HUMAN 1.81 n/a 1.6·10-51.00 2.00 -0.44 Weak Concordant
CEBPG_HUMAN 2.92 n/a 1.8·10-31.00 2.50 -0.56 Weak Concordant
CREB1_HUMAN 2.13 -1.24 4.7·10-31.00 1.00 0.59 Weak Discordant
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Motif analysis

CEBPG_HUMAN Weak Concordant
CEBPG_HUMAN pic

Genetic associations

GRASP college completion,  parkinsons disease,  rheumatoid arthritis,  serum creatinine,  total cholesterol

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